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Showing posts with the label Bioinformatics
Finding Matching Keys In Two Large Dictionaries And Doing It Fast

Finding Matching Keys In Two Large Dictionaries And Doing It Fast

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I am trying to find corresponding keys in two different dictionaries. Each has about 600k entries.… Read more Finding Matching Keys In Two Large Dictionaries And Doing It Fast
Single Linkage Clustering Of Edit Distance Matrix With Distance Threshold Stopping Criterion

Single Linkage Clustering Of Edit Distance Matrix With Distance Threshold Stopping Criterion

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I'm trying to assign flat, single-linkage clusters to sequence IDs separated by an edit distanc… Read more Single Linkage Clustering Of Edit Distance Matrix With Distance Threshold Stopping Criterion
Traceback In Smith-wateman Algorithm With Affine Gap Penalty

Traceback In Smith-wateman Algorithm With Affine Gap Penalty

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I'm trying to implement the Smith-Waterman algorithm for local sequence alignment using the aff… Read more Traceback In Smith-wateman Algorithm With Affine Gap Penalty